Microscopy Open Source Projects

Discover 1 open source Microscopy repository from GitHub, each with an analysis of what it does, key features, use cases and alternatives. Microscopy projects here are most often combined with Computer Vision, Image Processing and Python. Last updated October 28, 2026.

CellProfiler: Measure Biological Phenotypes from Images

CellProfiler is a Python application for biologists to automatically measure phenotypes across large sets of biological images. Stable releases are available for macOS and Windows, with source-installation guidance for Linux and contributors.

ActiveHealth 53/100

PythonComputer VisionImage Processing

Added May 16, 2026 View details

CellProfiler: Measure Biological Phenotypes from Images

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